PPaperPicks

Cheng Tan

Westlake University, AI Lab, School of Engineering, Hangzhou, China

35 papers at tracked venues · 32 at CORE A* · active 2024–2025

DBLP profile ↗ORCID 0000-0002-8639-923X ↗Google Scholar ↗Homepage ↗

Venues

ICLR ×9NeurIPS ×7AAAI ×6CVPR ×5ICML ×4ACM MM ×1ECCV ×1ECML-PKDD ×1IJCAI ×1

Frequent coauthors

Stan Z. Li
×30
Zhangyang Gao
×26
Siyuan Li
×17
Lirong Wu
×15
Yufei Huang
×14
Jun Xia
×10
Bozhen Hu
×10
Haitao Lin
×9
Zicheng Liu
×9
Jiangbin Zheng
×6
Jingxuan Wei
×5
Bihui Yu
×5

Papers

  1. AlphaFold Database Debiasing for Robust Inverse Folding
    NeurIPS 2025 · Cheng Tan,
    Zhenxiao Cao
    ,
    Zhangyang Gao
    ,
    Siyuan Li
    ,
    Yufei Huang
    ,
    Stan Z. Li
  2. CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph
    ICLR 2025 ·
    Haitao Lin
    ,
    Guojiang Zhao
    ,
    Odin Zhang
    ,
    Yufei Huang
    ,
    Lirong Wu
    , Cheng Tan,
    Zicheng Liu
    ,
    Zhifeng Gao
    ,
    Stan Z. Li
  3. DaCapo: Score Distillation as Stacked Bridge for Fast and High-quality 3D Editing
    CVPR 2025 ·
    Yufei Huang
    ,
    Bangyan Liao
    ,
    Yuqi Hu
    ,
    Haitao Lin
    ,
    Lirong Wu
    ,
    Siyuan Li
    , Cheng Tan,
    Zicheng Liu
    ,
    Yunfan Liu
    ,
    Zelin Zang
    ,
    Chang Yu
    ,
    Zhen Lei
  4. EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow
    ICLR 2025 ·
    Yufei Huang
    ,
    Yunshu Liu
    ,
    Lirong Wu
    ,
    Haitao Lin
    , Cheng Tan,
    Odin Zhang
    ,
    Zhangyang Gao
    ,
    Siyuan Li
    ,
    Zicheng Liu
    ,
    Yunfan Liu
    ,
    Tailin Wu
    ,
    Stan Z. Li
  5. FoldToken: Learning Protein Language via Vector Quantization and Beyond
    AAAI 2025 ·
    Zhangyang Gao
    , Cheng Tan,
    Jue Wang
    ,
    Yufei Huang
    ,
    Lirong Wu
    ,
    Stan Z. Li
  6. From Words to Structured Visuals: A Benchmark and Framework for Text-to-Diagram Generation and Editing
    CVPR 2025 ·
    Jingxuan Wei
    , Cheng Tan,
    Qi Chen
    ,
    Gaowei Wu
    ,
    Siyuan Li
    ,
    Zhangyang Gao
    ,
    Linzhuang Sun
    ,
    Bihui Yu
    ,
    Ruifeng Guo
  7. MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
    ICLR 2025 · Cheng Tan,
    Zhenxiao Cao
    ,
    Zhangyang Gao
    ,
    Lirong Wu
    ,
    Siyuan Li
    ,
    Yufei Huang
    ,
    Jun Xia
    ,
    Bozhen Hu
    ,
    Stan Z. Li
  8. MergeVQ: A Unified Framework for Visual Generation and Representation with Disentangled Token Merging and Quantization
    CVPR 2025 ·
    Siyuan Li
    ,
    Luyuan Zhang
    ,
    Zedong Wang
    ,
    Juanxi Tian
    , Cheng Tan,
    Zicheng Liu
    ,
    Chang Yu
    ,
    Qingsong Xie
    ,
    Haonan Lu
    ,
    Haoqian Wang
    ,
    Zhen Lei
  9. ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search
    NeurIPS 2025 ·
    Mengdi Liu
    ,
    Xiaoxue Cheng
    ,
    Zhangyang Gao
    ,
    Hong Chang
    , Cheng Tan,
    Shiguang Shan
    ,
    Xilin Chen
  10. ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing
    ICLR 2025 ·
    Shaorong Chen
    ,
    Jun Xia
    ,
    Jingbo Zhou
    ,
    Lecheng Zhang
    ,
    Zhangyang Gao
    ,
    Bozhen Hu
    , Cheng Tan,
    Wenjie Du
    ,
    Stan Z. Li
  11. Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization
    AAAI 2025 ·
    Lirong Wu
    ,
    Haitao Lin
    ,
    Yufei Huang
    ,
    Zhangyang Gao
    , Cheng Tan,
    Yunfan Liu
    ,
    Tailin Wu
    ,
    Stan Z. Li
  12. ResearchPulse: Building Method-Experiment Chains through Multi-Document Scientific Inference
    ACM MM 2025 ·
    Qi Chen
    ,
    Jingxuan Wei
    ,
    Zhuoya Yao
    ,
    Haiguang Wang
    ,
    Gaowei Wu
    ,
    Bihui Yu
    ,
    Siyuan Li
    , Cheng Tan
  13. SketchAgent: Generating Structured Diagrams from Hand-Drawn Sketches
    IJCAI 2025 · Cheng Tan,
    Qi Chen
    ,
    Jingxuan Wei
    ,
    Gaowei Wu
    ,
    Zhangyang Gao
    ,
    Siyuan Li
    ,
    Bihui Yu
    ,
    Ruifeng Guo
    ,
    Stan Z. Li
  14. dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen
    AAAI 2025 · Cheng Tan,
    Yijie Zhang
    ,
    Zhangyang Gao
    ,
    Yufei Huang
    ,
    Haitao Lin
    ,
    Lirong Wu
    ,
    Fandi Wu
    ,
    Mathieu Blanchette
    ,
    Stan Z. Li
  15. A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer
    ICML 2024 ·
    Zhangyang Gao
    ,
    Daize Dong
    , Cheng Tan,
    Jun Xia
    ,
    Bozhen Hu
    ,
    Stan Z. Li
  16. AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics against Data Biases
    NeurIPS 2024 ·
    Jun Xia
    ,
    Shaorong Chen
    ,
    Jingbo Zhou
    ,
    Xiaojun Shan
    ,
    Wenjie Du
    ,
    Zhangyang Gao
    , Cheng Tan,
    Bozhen Hu
    ,
    Jiangbin Zheng
    ,
    Stan Z. Li
  17. Boosting the Power of Small Multimodal Reasoning Models to Match Larger Models with Self-consistency Training
    ECCV 2024 · Cheng Tan,
    Jingxuan Wei
    ,
    Zhangyang Gao
    ,
    Linzhuang Sun
    ,
    Siyuan Li
    ,
    Ruifeng Guo
    ,
    Bihui Yu
    ,
    Stan Z. Li
  18. Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer
    AAAI 2024 · Cheng Tan,
    Zhangyang Gao
    ,
    Lirong Wu
    ,
    Jun Xia
    ,
    Jiangbin Zheng
    ,
    Xihong Yang
    ,
    Yue Liu
    ,
    Bozhen Hu
    ,
    Stan Z. Li
  19. Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective
    ICML 2024 · Cheng Tan,
    Zhangyang Gao
    ,
    Hanqun Cao
    ,
    Xingran Chen
    ,
    Ge Wang
    ,
    Lirong Wu
    ,
    Jun Xia
    ,
    Jiangbin Zheng
    ,
    Stan Z. Li
  20. Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks
    ICLR 2024 ·
    Tianyu Fan
    ,
    Lirong Wu
    ,
    Yufei Huang
    ,
    Haitao Lin
    , Cheng Tan,
    Zhangyang Gao
    ,
    Stan Z. Li
  21. FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning
    NeurIPS 2024 ·
    Sizhe Liu
    ,
    Jun Xia
    ,
    Lecheng Zhang
    ,
    Yuchen Liu
    ,
    Yue Liu
    ,
    Wenjie Du
    ,
    Zhangyang Gao
    ,
    Bozhen Hu
    , Cheng Tan,
    Hongxin Xiang
    ,
    Stan Z. Li
  22. General Point Model Pretraining with Autoencoding and Autoregressive
    CVPR 2024 ·
    Zhe Li
    ,
    Zhangyang Gao
    , Cheng Tan,
    Bocheng Ren
    ,
    Laurence T. Yang
    ,
    Stan Z. Li
  23. Interpretable and Generalizable Spatiotemporal Predictive Learning with Disentangled Consistency
    ECML-PKDD 2024 ·
    Jingxuan Wei
    , Cheng Tan,
    Zhangyang Gao
    ,
    Linzhuang Sun
    ,
    Bihui Yu
    ,
    Ruifeng Guo
    ,
    Stan Z. Li
  24. KW-Design: Pushing the Limit of Protein Design via Knowledge Refinement
    ICLR 2024 ·
    Zhangyang Gao
    , Cheng Tan,
    Xingran Chen
    ,
    Yijie Zhang
    ,
    Jun Xia
    ,
    Siyuan Li
    ,
    Stan Z. Li
  25. Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure
    NeurIPS 2024 ·
    Bozhen Hu
    , Cheng Tan,
    Jun Xia
    ,
    Yue Liu
    ,
    Lirong Wu
    ,
    Jiangbin Zheng
    ,
    Yongjie Xu
    ,
    Yufei Huang
    ,
    Stan Z. Li
  26. MLIP: Enhancing Medical Visual Representation with Divergence Encoder and Knowledge-guided Contrastive Learning
    CVPR 2024 ·
    Zhe Li
    ,
    Laurence T. Yang
    ,
    Bocheng Ren
    ,
    Xin Nie
    ,
    Zhangyang Gao
    , Cheng Tan,
    Stan Z. Li
  27. MogaNet: Multi-order Gated Aggregation Network
    ICLR 2024 ·
    Siyuan Li
    ,
    Zedong Wang
    ,
    Zicheng Liu
    , Cheng Tan,
    Haitao Lin
    ,
    Di Wu
    ,
    Zhiyuan Chen
    ,
    Jiangbin Zheng
    ,
    Stan Z. Li
  28. PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
    AAAI 2024 ·
    Lirong Wu
    ,
    Yufei Huang
    , Cheng Tan,
    Zhangyang Gao
    ,
    Bozhen Hu
    ,
    Haitao Lin
    ,
    Zicheng Liu
    ,
    Stan Z. Li
  29. ProtGO: Function-Guided Protein Modeling for Unified Representation Learning
    NeurIPS 2024 ·
    Bozhen Hu
    , Cheng Tan,
    Yongjie Xu
    ,
    Zhangyang Gao
    ,
    Jun Xia
    ,
    Lirong Wu
    ,
    Stan Z. Li
  30. RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design
    ICLR 2024 · Cheng Tan,
    Yijie Zhang
    ,
    Zhangyang Gao
    ,
    Bozhen Hu
    ,
    Siyuan Li
    ,
    Zicheng Liu
    ,
    Stan Z. Li
  31. Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
    ICML 2024 ·
    Yufei Huang
    ,
    Odin Zhang
    ,
    Lirong Wu
    , Cheng Tan,
    Haitao Lin
    ,
    Zhangyang Gao
    ,
    Siyuan Li
    ,
    Stan Z. Li
  32. SemiReward: A General Reward Model for Semi-supervised Learning
    ICLR 2024 ·
    Siyuan Li
    ,
    Weiyang Jin
    ,
    Zedong Wang
    ,
    Fang Wu
    ,
    Zicheng Liu
    , Cheng Tan,
    Stan Z. Li
  33. UniIF: Unified Molecule Inverse Folding
    NeurIPS 2024 ·
    Zhangyang Gao
    ,
    Jue Wang
    , Cheng Tan,
    Lirong Wu
    ,
    Yufei Huang
    ,
    Siyuan Li
    ,
    Zhirui Ye
    ,
    Stan Z. Li
  34. VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
    ICML 2024 ·
    Siyuan Li
    ,
    Zedong Wang
    ,
    Zicheng Liu
    ,
    Di Wu
    , Cheng Tan,
    Jiangbin Zheng
    ,
    Yufei Huang
    ,
    Stan Z. Li
  35. Wavelet-Driven Spatiotemporal Predictive Learning: Bridging Frequency and Time Variations
    AAAI 2024 ·
    Xuesong Nie
    ,
    Yunfeng Yan
    ,
    Siyuan Li
    , Cheng Tan,
    Xi Chen
    ,
    Haoyuan Jin
    ,
    Zhihang Zhu
    ,
    Stan Z. Li
    ,
    Donglian Qi