PPaperPicks

Jingbo Zhou

14 papers at tracked venues · 12 at CORE A* · active 2024–2026

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Venues

AAAI ×4NeurIPS ×4ICLR ×2IJCAI ×2ICDE ×1WWW ×1

Frequent coauthors

Jun Xia
×10
Stan Z. Li
×9
Shaorong Chen
×6
Chang Yu
×3
Changxi Chi
×3
Wenjie Du
×3
Siyuan Li
×2
Zicheng Liu
×2
Tianze Ling
×2
Sizhe Liu
×2
Yue Liu
×2
Jiabei Cheng
×2

Papers

  1. MergeDNA: Context-Aware Genome Modeling with Dynamic Tokenization Through Token Merging
    AAAI 2026 ·
    Siyuan Li
    ,
    Kai Yu
    ,
    Anna Wang
    ,
    Zicheng Liu
    ,
    Chang Yu
    , Jingbo Zhou,
    Qirong Yang
    ,
    Yucheng Guo
    ,
    Xiaoming Zhang
    ,
    Stan Z. Li
  2. Regressor-guided Diffusion Model for De Novo Peptide Sequencing with Explicit Mass Control
    AAAI 2026 ·
    Shaorong Chen
    , Jingbo Zhou,
    Jun Xia
  3. VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
    WWW 2026 · Jingbo Zhou,
    Jun Xia
    ,
    Siyuan Li
    ,
    Yunfan Liu
    ,
    Wenjun Wang
    ,
    Yufei Huang
    ,
    Changxi Chi
    ,
    Mutian Hong
    ,
    Zhuoli Ouyang
    ,
    Shu Wang
    ,
    Zhongqi Wang
    ,
    Xingyu Wu
    ,
    Chang Yu
    ,
    Stan Z. Li
  4. A Comprehensive and Systematic Review for Deep Learning-Based De Novo Peptide Sequencing
    IJCAI 2025 ·
    Jun Xia
    , Jingbo Zhou,
    Shaorong Chen
    ,
    Tianze Ling
    ,
    Stan Z. Li
  5. ARAG: Analysis and Retrieval Augmented Generation for Comprehensive Reasoning over Socioeconomic Data
    ICDE 2025 ·
    Yixiong Xiao
    ,
    Jingjia Cao
    ,
    Yangxin Jiang
    , Jingbo Zhou
  6. Bridging the Gap between Database Search and De Novo Peptide Sequencing with SearchNovo
    ICLR 2025 ·
    Jun Xia
    ,
    Sizhe Liu
    , Jingbo Zhou,
    Shaorong Chen
    ,
    Hongxin Xiang
    ,
    Zicheng Liu
    ,
    Yue Liu
    ,
    Stan Z. Li
  7. GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype
    IJCAI 2025 ·
    Changxi Chi
    ,
    Jun Xia
    , Jingbo Zhou,
    Jiabei Cheng
    ,
    Chang Yu
    ,
    Stan Z. Li
  8. Improving Retrieval Augmented Language Model with Self-Reasoning
    AAAI 2025 ·
    Yuan Xia
    , Jingbo Zhou,
    Zhenhui Shi
    ,
    Jun Chen
    ,
    Haifeng Huang
  9. PRESCRIBE: Predicting Single-Cell Responses with Bayesian Estimation
    NeurIPS 2025 ·
    Jiabei Cheng
    ,
    Changxi Chi
    , Jingbo Zhou,
    Hongyi Xin
    ,
    Jun Xia
  10. ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing
    ICLR 2025 ·
    Shaorong Chen
    ,
    Jun Xia
    , Jingbo Zhou,
    Lecheng Zhang
    ,
    Zhangyang Gao
    ,
    Bozhen Hu
    ,
    Cheng Tan
    ,
    Wenjie Du
    ,
    Stan Z. Li
  11. AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics against Data Biases
    NeurIPS 2024 ·
    Jun Xia
    ,
    Shaorong Chen
    , Jingbo Zhou,
    Xiaojun Shan
    ,
    Wenjie Du
    ,
    Zhangyang Gao
    ,
    Cheng Tan
    ,
    Bozhen Hu
    ,
    Jiangbin Zheng
    ,
    Stan Z. Li
  12. Deep Graph Neural Networks via Posteriori-Sampling-based Node-Adaptative Residual Module
    NeurIPS 2024 · Jingbo Zhou,
    Yixuan Du
    ,
    Ruqiong Zhang
    ,
    Jun Xia
    ,
    Zhizhi Yu
    ,
    Zelin Zang
    ,
    Di Jin
    ,
    Carl Yang
    ,
    Rui Zhang
    ,
    Stan Z. Li
  13. Explainable Origin-Destination Crowd Flow Interpolation via Variational Multi-Modal Recurrent Graph Auto-Encoder
    AAAI 2024 ·
    Qiang Zhou
    ,
    Xinjiang Lu
    ,
    Jingjing Gu
    ,
    Zhe Zheng
    ,
    Bo Jin
    , Jingbo Zhou
  14. NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics
    NeurIPS 2024 · Jingbo Zhou,
    Shaorong Chen
    ,
    Jun Xia
    ,
    Sizhe Liu
    ,
    Tianze Ling
    ,
    Wenjie Du
    ,
    Yue Liu
    ,
    Jianwei Yin
    ,
    Stan Z. Li