Jingbo Zhou

Venues

Frequent coauthors

Papers

1. MergeDNA: Context-Aware Genome Modeling with Dynamic Tokenization Through Token Merging
   AAAI 2026 ·

   Siyuan Li

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2. Regressor-guided Diffusion Model for De Novo Peptide Sequencing with Explicit Mass Control
   AAAI 2026 ·

   Shaorong Chen

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3. VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
   WWW 2026 · Jingbo Zhou
4. A Comprehensive and Systematic Review for Deep Learning-Based De Novo Peptide Sequencing
   IJCAI 2025 ·

   Jun Xia

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5. ARAG: Analysis and Retrieval Augmented Generation for Comprehensive Reasoning over Socioeconomic Data
   ICDE 2025 ·

   Yixiong Xiao

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6. Bridging the Gap between Database Search and De Novo Peptide Sequencing with SearchNovo
   ICLR 2025 ·

   Jun Xia

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7. GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype
   IJCAI 2025 ·

   Changxi Chi

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8. Improving Retrieval Augmented Language Model with Self-Reasoning
   AAAI 2025 ·

   Yuan Xia

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9. PRESCRIBE: Predicting Single-Cell Responses with Bayesian Estimation
   NeurIPS 2025 ·

   Jiabei Cheng

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10. ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing
    ICLR 2025 ·

    Shaorong Chen

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11. AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics against Data Biases
    NeurIPS 2024 ·

    Jun Xia

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12. Deep Graph Neural Networks via Posteriori-Sampling-based Node-Adaptative Residual Module
    NeurIPS 2024 · Jingbo Zhou
13. Explainable Origin-Destination Crowd Flow Interpolation via Variational Multi-Modal Recurrent Graph Auto-Encoder
    AAAI 2024 ·

    Qiang Zhou

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14. NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics
    NeurIPS 2024 · Jingbo Zhou