Lirong Wu

22 papers at tracked venues · 21 at CORE A* · active 2024–2025

DBLP profile ↗ORCID search ↗

Venues

AAAI ×6 ICLR ×6 ICML ×5 NeurIPS ×3 CIKM ×1 CVPR ×1

Frequent coauthors

Stan Z. Li

×21

Yufei Huang

×19

Haitao Lin

×15

Cheng Tan

×15

Zhangyang Gao

×13

Siyuan Li

×8

Yunfan Liu

×6

Odin Zhang

×6

Zicheng Liu

×5

Jun Xia

×5

Bozhen Hu

×5

Jiangbin Zheng

×4

Papers

A Simple yet Effective ΔΔG Predictor is An Unsupervised Antibody Optimizer and Explainer
ICLR 2025 · Lirong Wu,
Yunfan Liu
,
Haitao Lin
,
Yufei Huang
,
Guojiang Zhao
,
Zhifeng Gao
,
Stan Z. Li
CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph
ICLR 2025 ·
Haitao Lin
,
Guojiang Zhao
,
Odin Zhang
,
Yufei Huang
, Lirong Wu,
Cheng Tan
,
Zicheng Liu
,
Zhifeng Gao
,
Stan Z. Li
DaCapo: Score Distillation as Stacked Bridge for Fast and High-quality 3D Editing
CVPR 2025 ·
Yufei Huang
,
Bangyan Liao
,
Yuqi Hu
,
Haitao Lin
, Lirong Wu,
Siyuan Li
,
Cheng Tan
,
Zicheng Liu
,
Yunfan Liu
,
Zelin Zang
,
Chang Yu
,
Zhen Lei
EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow
ICLR 2025 ·
Yufei Huang
,
Yunshu Liu
, Lirong Wu,
Haitao Lin
,
Cheng Tan
,
Odin Zhang
,
Zhangyang Gao
,
Siyuan Li
,
Zicheng Liu
,
Yunfan Liu
,
Tailin Wu
,
Stan Z. Li
FoldToken: Learning Protein Language via Vector Quantization and Beyond
AAAI 2025 ·
Zhangyang Gao
,
Cheng Tan
,
Jue Wang
,
Yufei Huang
, Lirong Wu,
Stan Z. Li
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
ICLR 2025 ·
Cheng Tan
,
Zhenxiao Cao
,
Zhangyang Gao
, Lirong Wu,
Siyuan Li
,
Yufei Huang
,
Jun Xia
,
Bozhen Hu
,
Stan Z. Li
Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization
AAAI 2025 · Lirong Wu,
Haitao Lin
,
Yufei Huang
,
Zhangyang Gao
,
Cheng Tan
,
Yunfan Liu
,
Tailin Wu
,
Stan Z. Li
dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen
AAAI 2025 ·
Cheng Tan
,
Yijie Zhang
,
Zhangyang Gao
,
Yufei Huang
,
Haitao Lin
, Lirong Wu,
Fandi Wu
,
Mathieu Blanchette
,
Stan Z. Li
Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer
AAAI 2024 ·
Cheng Tan
,
Zhangyang Gao
, Lirong Wu,
Jun Xia
,
Jiangbin Zheng
,
Xihong Yang
,
Yue Liu
,
Bozhen Hu
,
Stan Z. Li
Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective
ICML 2024 ·
Cheng Tan
,
Zhangyang Gao
,
Hanqun Cao
,
Xingran Chen
,
Ge Wang
, Lirong Wu,
Jun Xia
,
Jiangbin Zheng
,
Stan Z. Li
Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks
ICLR 2024 ·
Tianyu Fan
, Lirong Wu,
Yufei Huang
,
Haitao Lin
,
Cheng Tan
,
Zhangyang Gao
,
Stan Z. Li
GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation
ICML 2024 ·
Haitao Lin
, Lirong Wu,
Yufei Huang
,
Yunfan Liu
,
Odin Zhang
,
Yuanqing Zhou
,
Rui Sun
,
Stan Z. Li
Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure
NeurIPS 2024 ·
Bozhen Hu
,
Cheng Tan
,
Jun Xia
,
Yue Liu
, Lirong Wu,
Jiangbin Zheng
,
Yongjie Xu
,
Yufei Huang
,
Stan Z. Li
Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning
ICML 2024 · Lirong Wu,
Yijun Tian
,
Haitao Lin
,
Yufei Huang
,
Siyuan Li
,
Nitesh V. Chawla
,
Stan Z. Li
MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding
ICLR 2024 · Lirong Wu,
Yijun Tian
,
Yufei Huang
,
Siyuan Li
,
Haitao Lin
,
Nitesh V. Chawla
,
Stan Z. Li
PPFLOW: Target-Aware Peptide Design with Torsional Flow Matching
ICML 2024 ·
Haitao Lin
,
Odin Zhang
,
Huifeng Zhao
,
Dejun Jiang
, Lirong Wu,
Zicheng Liu
,
Yufei Huang
,
Stan Z. Li
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
AAAI 2024 · Lirong Wu,
Yufei Huang
,
Cheng Tan
,
Zhangyang Gao
,
Bozhen Hu
,
Haitao Lin
,
Zicheng Liu
,
Stan Z. Li
ProtGO: Function-Guided Protein Modeling for Unified Representation Learning
NeurIPS 2024 ·
Bozhen Hu
,
Cheng Tan
,
Yongjie Xu
,
Zhangyang Gao
,
Jun Xia
, Lirong Wu,
Stan Z. Li
Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction
AAAI 2024 ·
Yufei Huang
,
Siyuan Li
, Lirong Wu,
Jin Su
,
Haitao Lin
,
Odin Zhang
,
Zihan Liu
,
Zhangyang Gao
,
Jiangbin Zheng
,
Stan Z. Li
Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
ICML 2024 ·
Yufei Huang
,
Odin Zhang
, Lirong Wu,
Cheng Tan
,
Haitao Lin
,
Zhangyang Gao
,
Siyuan Li
,
Stan Z. Li
Teach Harder, Learn Poorer: Rethinking Hard Sample Distillation for GNN-to-MLP Knowledge Distillation
CIKM 2024 · Lirong Wu,
Yunfan Liu
,
Haitao Lin
,
Yufei Huang
,
Stan Z. Li
UniIF: Unified Molecule Inverse Folding
NeurIPS 2024 ·
Zhangyang Gao
,
Jue Wang
,
Cheng Tan
, Lirong Wu,
Yufei Huang
,
Siyuan Li
,
Zhirui Ye
,
Stan Z. Li