Nanqing Dong

16 papers at tracked venues · 12 at CORE A* · active 2024–2026

DBLP profile ↗ORCID 0000-0001-5014-1993 ↗

Venues

ACL ×4 NeurIPS ×4 IJCAI ×3 AAAI ×2 ICML ×2 EMNLP ×1

Frequent coauthors

Wanli Ouyang

×9

Zhefan Wang

×5

Jinzhe Li

×4

Sheng Xu

×4

Zhiqiang Gao

×4

Siqi Sun

×4

Zhonghang Yuan

×3

Jie Ying

×3

Huanjun Kong

×3

Jiaqi Wei

×3

Zijie Qiu

×3

Zhi Jin

×3

Papers

Knowledge-to-Verification: Exploring RLVR for LLMs in Knowledge-Intensive Domains
ACL 2026 ·
Zhonghang Yuan
,
Zhefan Wang
,
Fang Hu
,
Zihong Chen
,
Jinzhe Li
,
Gang Li
,
Jie Ying
,
Huanjun Kong
,
Songyang Zhang
, Nanqing Dong
Bidirectional Representations Augmented Autoregressive Biological Sequence Generation
NeurIPS 2025 ·
Xiang Zhang
,
Jiaqi Wei
,
Zijie Qiu
,
Sheng Xu
,
Zhi Jin
,
Zhiqiang Gao
, Nanqing Dong,
Siqi Sun
Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models
EMNLP 2025 ·
Haonan He
,
Yuchen Ren
,
Yining Tang
,
Ziyang Xu
,
Junxian Li
,
Minghao Yang
,
Di Zhang
,
Dong Yuan
,
Tao Chen
,
Shufei Zhang
,
Yuqiang Li
, Nanqing Dong,
Wanli Ouyang
,
Dongzhan Zhou
,
Peng Ye
Curriculum Learning for Biological Sequence Prediction: The Case of De Novo Peptide Sequencing
ICML 2025 ·
Xiang Zhang
,
Jiaqi Wei
,
Zijie Qiu
,
Sheng Xu
, Nanqing Dong,
Zhiqiang Gao
,
Siqi Sun
Many Heads Are Better Than One: Improved Scientific Idea Generation by A LLM-Based Multi-Agent System
ACL 2025 ·
Haoyang Su
,
Renqi Chen
,
Shixiang Tang
,
Zhenfei Yin
,
Xinzhe Zheng
,
Jinzhe Li
,
Biqing Qi
,
Qi Wu
,
Hui Li
,
Wanli Ouyang
,
Philip Torr
,
Bowen Zhou
, Nanqing Dong
PRING: Rethinking Protein-Protein Interaction Prediction from Pairs to Graphs
NeurIPS 2025 ·
Xinzhe Zheng
,
Hao Du
,
Fanding Xu
,
Jinzhe Li
,
Zhiyuan Liu
,
Wenkang Wang
,
Tao Chen
,
Wanli Ouyang
,
Stan Z. Li
,
Yan Lu
, Nanqing Dong,
Yang Zhang
ROGRAG: A Robustly Optimized GraphRAG Framework
ACL 2025 ·
Zhefan Wang
,
Huanjun Kong
,
Jie Ying
,
Wanli Ouyang
, Nanqing Dong
SeedBench: A Multi-task Benchmark for Evaluating Large Language Models in Seed Science
ACL 2025 ·
Jie Ying
,
Zihong Chen
,
Zhefan Wang
,
Wanli Jiang
,
Chenyang Wang
,
Zhonghang Yuan
,
Haoyang Su
,
Huanjun Kong
,
Fan Yang
, Nanqing Dong
Towards Efficient and Intelligent Laser Weeding: Method and Dataset for Weed Stem Detection
AAAI 2025 ·
Dingning Liu
,
Jinzhe Li
,
Haoyang Su
,
Bei Cui
,
Zhihui Wang
,
Qingbo Yuan
,
Wanli Ouyang
, Nanqing Dong
Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing
ICML 2025 ·
Zijie Qiu
,
Jiaqi Wei
,
Xiang Zhang
,
Sheng Xu
,
Kai Zou
,
Zhi Jin
,
Zhiqiang Gao
, Nanqing Dong,
Siqi Sun
An Embarrassingly Simple Approach to Enhance Transformer Performance in Genomic Selection for Crop Breeding
IJCAI 2024 ·
Renqi Chen
,
Wenwei Han
,
Haohao Zhang
,
Haoyang Su
,
Zhefan Wang
,
Xiaolei Liu
,
Hao Jiang
,
Wanli Ouyang
, Nanqing Dong
Benchmarking Fish Dataset and Evaluation Metric in Keypoint Detection - Towards Precise Fish Morphological Assessment in Aquaculture Breeding
IJCAI 2024 ·
Weizhen Liu
,
Jiayu Tan
,
Guangyu Lan
,
Ao Li
,
Dongye Li
,
Le Zhao
,
Xiaohui Yuan
, Nanqing Dong
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing
AAAI 2024 ·
Zhi Jin
,
Sheng Xu
,
Xiang Zhang
,
Tianze Ling
, Nanqing Dong,
Wanli Ouyang
,
Zhiqiang Gao
,
Cheng Chang
,
Siqi Sun
Empowering and Assessing the Utility of Large Language Models in Crop Science
NeurIPS 2024 ·
Hang Zhang
,
Jiawei Sun
,
Renqi Chen
,
Wei Liu
,
Zhonghang Yuan
,
Xinzhe Zheng
,
Zhefan Wang
,
Zhiyuan Yang
,
Hang Yan
,
Han-Sen Zhong
,
Xiqing Wang
,
Wanli Ouyang
,
Fan Yang
, Nanqing Dong
Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA
NeurIPS 2024 ·
Lifeng Qiao
,
Peng Ye
,
Yuchen Ren
,
Weiqiang Bai
,
Chaoqi Liang
,
Xinzhu Ma
, Nanqing Dong,
Wanli Ouyang
Revealing Hierarchical Structure of Leaf Venations in Plant Science via Label-Efficient Segmentation: Dataset and Method
IJCAI 2024 ·
Weizhen Liu
,
Ao Li
,
Ze Wu
,
Yue Li
,
Baobin Ge
,
Guangyu Lan
,
Shilin Chen
,
Minghe Li
,
Yunfei Liu
,
Xiaohui Yuan
, Nanqing Dong