PPaperPicks

Rex Ying

Stanford University, Department of Computer Science, CA, USA

38 papers at tracked venues · 31 at CORE A* · active 2024–2026

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Venues

ICML ×8NeurIPS ×8SIGKDD ×7EMNLP ×4WWW ×3ACL ×2AAAI ×1AISTATS ×1CIKM ×1ICLR ×1SIGMOD ×1WSDM ×1

Frequent coauthors

Menglin Yang
×10
Jialin Chen
×8
Leandros Tassiulas
×7
Aosong Feng
×7
Ngoc Bui
×6
Jiasheng Zhang
×5
Ali Maatouk
×4
Weikang Qiu
×4
Jie Shao
×4
Tinglin Huang
×3
Yilun Zhao
×3
Neil He
×3

Papers

  1. Experience Retrieval-Augmentation with Electronic Health Records Enables Accurate Discharge QA
    ACL 2026 ·
    Justice Ou
    ,
    Tinglin Huang
    ,
    Yilun Zhao
    ,
    Ziyang Yu
    ,
    Peiqing Lu
    ,
    Yifei Shen
    , Rex Ying
  2. LitBench: A Graph-Centric Large Language Model Benchmarking Tool For Literature Tasks
    SIGKDD 2026 ·
    Andreas Varvarigos
    ,
    Ali Maatouk
    ,
    Jiasheng Zhang
    ,
    Ngoc Bui
    ,
    Jialin Chen
    ,
    Leandros Tassiulas
    , Rex Ying
  3. Towards A Universal Graph Structural Encoder
    WWW 2026 ·
    Jialin Chen
    ,
    Haolan Zuo
    ,
    Haoyu Wang
    ,
    Siqi Miao
    ,
    Pan Li
    , Rex Ying
  4. An Item Is Worth a Prompt: Versatile Image Editing with Disentangled Control
    AAAI 2025 ·
    Aosong Feng
    ,
    Weikang Qiu
    ,
    Jinbin Bai
    ,
    Zhen Dong
    ,
    Kaicheng Zhou
    ,
    Xiao Zhang
    , Rex Ying,
    Leandros Tassiulas
  5. Flow Matching for Collaborative Filtering
    SIGKDD 2025 ·
    Chengkai Liu
    ,
    Yangtian Zhang
    ,
    Jianling Wang
    , Rex Ying,
    James Caverlee
  6. GRIL: Knowledge Graph Retrieval-Integrated Learning with Large Language Models
    EMNLP 2025 ·
    Jialin Chen
    ,
    Houyu Zhang
    ,
    Seongjun Yun
    ,
    Alejandro Mottini
    , Rex Ying,
    Xiang Song
    ,
    Vassilis N. Ioannidis
    ,
    Zheng Li
    ,
    Qingjun Cui
  7. HELM: Hyperbolic Large Language Models via Mixture-of-Curvature Experts
    NeurIPS 2025 ·
    Neil He
    ,
    Rishabh Anand
    ,
    Hiren Madhu
    ,
    Ali Maatouk
    ,
    Smita Krishnaswamy
    ,
    Leandros Tassiulas
    ,
    Menglin Yang
    , Rex Ying
  8. HiPoNet: A Multi-View Simplicial Complex Network for High Dimensional Point-Cloud and Single-Cell data
    NeurIPS 2025 ·
    Siddharth Viswanath
    ,
    Hiren Madhu
    ,
    Dhananjay Bhaskar
    ,
    Jake Kovalic
    ,
    Dave Johnson
    ,
    Christopher J. Tape
    ,
    Ian Adelstein
    , Rex Ying,
    Michael Perlmutter
    ,
    Smita Krishnaswamy
  9. Hyperbolic Deep Learning for Foundation Models: A Survey
    SIGKDD 2025 ·
    Neil He
    ,
    Hiren Madhu
    ,
    Ngoc Bui
    ,
    Menglin Yang
    , Rex Ying
  10. Hyperbolic Fine-Tuning for Large Language Models
    NeurIPS 2025 ·
    Menglin Yang
    ,
    Ram Samarth B. B.
    ,
    Aosong Feng
    ,
    Bo Xiong
    ,
    Jiahong Liu
    ,
    Irwin King
    , Rex Ying
  11. Learning Along the Arrow of Time: Hyperbolic Geometry for Backward-Compatible Representation Learning
    ICML 2025 ·
    Ngoc Bui
    ,
    Menglin Yang
    ,
    Runjin Chen
    ,
    Leonardo Neves
    ,
    Mingxuan Ju
    , Rex Ying,
    Neil Shah
    ,
    Tong Zhao
  12. LitFM: A Retrieval Augmented Structure-aware Foundation Model For Citation Graphs
    SIGKDD 2025 ·
    Jiasheng Zhang
    ,
    Ali Maatouk
    ,
    Jialin Chen
    ,
    Ngoc Bui
    ,
    Qianqian Xie
    ,
    Leandros Tassiulas
    ,
    Hua Xu
    ,
    Jie Shao
    , Rex Ying
  13. Lorentzian Residual Neural Networks
    SIGKDD 2025 ·
    Neil He
    ,
    Menglin Yang
    , Rex Ying
  14. MUSE: A Multi-slice Joint Analysis Method for Spatial Transcriptomics Experiments
    CIKM 2025 ·
    Ziheng Duan
    ,
    Xi Li
    ,
    Zhiqing Xiao
    , Rex Ying,
    Jing Zhang
  15. MindLLM: A Subject-Agnostic and Versatile Model for fMRI-to-text Decoding
    ICML 2025 ·
    Weikang Qiu
    ,
    Zheng Huang
    ,
    Haoyu Hu
    ,
    Aosong Feng
    ,
    Yujun Yan
    , Rex Ying
  16. Mixture-of-Personas Language Models for Population Simulation
    ACL 2025 ·
    Ngoc Bui
    ,
    Hieu Trung Nguyen
    ,
    Shantanu Kumar
    ,
    Julian Theodore
    ,
    Weikang Qiu
    ,
    Viet Anh Nguyen
    , Rex Ying
  17. Non-Markovian Discrete Diffusion with Causal Language Models
    NeurIPS 2025 ·
    Yangtian Zhang
    ,
    Sizhuang He
    ,
    Daniel LeVine
    ,
    Lawrence Zhao
    ,
    David Zhang
    ,
    Syed Asad Rizvi
    ,
    Shiyang Zhang
    ,
    Emanuele Zappala
    , Rex Ying,
    David van Dijk
  18. Retrieval-Augmented Language Model for Knowledge-aware Protein Encoding
    ICML 2025 ·
    Jiasheng Zhang
    ,
    Delvin Ce Zhang
    ,
    Shuang Liang
    ,
    Zhengpin Li
    , Rex Ying,
    Jie Shao
  19. Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching
    ICML 2025 ·
    Tinglin Huang
    ,
    Tianyu Liu
    ,
    Mehrtash Babadi
    ,
    Wengong Jin
    , Rex Ying
  20. TRACE: Grounding Time Series in Context for Multimodal Embedding and Retrieval
    NeurIPS 2025 ·
    Jialin Chen
    ,
    Ziyu Zhao
    ,
    Gaukhar Nurbek
    ,
    Aosong Feng
    ,
    Ali Maatouk
    ,
    Leandros Tassiulas
    ,
    Yifeng Gao
    , Rex Ying
  21. Towards Non-Euclidean Foundation Models: Advancing AI Beyond Euclidean Frameworks
    WWW 2025 ·
    Menglin Yang
    ,
    Yifei Zhang
    ,
    Jialin Chen
    ,
    Melanie Weber
    , Rex Ying
  22. Understanding and Mitigating Hyperbolic Dimensional Collapse in Graph Contrastive Learning
    SIGKDD 2025 ·
    Yifei Zhang
    ,
    Hao Zhu
    ,
    Menglin Yang
    ,
    Jiahong Liu
    , Rex Ying,
    Irwin King
    ,
    Piotr Koniusz
  23. BLIS-Net: Classifying and Analyzing Signals on Graphs
    AISTATS 2024 ·
    Charles Xu
    ,
    Laney Goldman
    ,
    Valentina Guo
    ,
    Benjamin Hollander-Bodie
    ,
    Maedee Trank-Greene
    ,
    Ian Adelstein
    ,
    Edward De Brouwer
    , Rex Ying,
    Smita Krishnaswamy
    ,
    Michael Perlmutter
  24. DTGB: A Comprehensive Benchmark for Dynamic Text-Attributed Graphs
    NeurIPS 2024 ·
    Jiasheng Zhang
    ,
    Jialin Chen
    ,
    Menglin Yang
    ,
    Aosong Feng
    ,
    Shuang Liang
    ,
    Jie Shao
    , Rex Ying
  25. DeSCo: Towards Generalizable and Scalable Deep Subgraph Counting
    WSDM 2024 ·
    Tianyu Fu
    ,
    Chiyue Wei
    ,
    Yu Wang
    , Rex Ying
  26. Explaining Graph Neural Networks via Structure-aware Interaction Index
    ICML 2024 ·
    Ngoc Bui
    ,
    Hieu Trung Nguyen
    ,
    Viet Anh Nguyen
    , Rex Ying
  27. FOLIO: Natural Language Reasoning with First-Order Logic
    EMNLP 2024 ·
    Simeng Han
    ,
    Hailey Schoelkopf
    ,
    Yilun Zhao
    ,
    Zhenting Qi
    ,
    Martin Riddell
    ,
    Wenfei Zhou
    ,
    James Coady
    ,
    David Peng
    ,
    Yujie Qiao
    ,
    Luke Benson
    ,
    Lucy Sun
    ,
    Alexander Wardle-Solano
    ,
    Hannah Szabó
    ,
    Ekaterina Zubova
    ,
    Matthew Burtell
    ,
    Jonathan Fan
    ,
    Yixin Liu
    ,
    Brian Wong
    ,
    Malcolm Sailor
    ,
    Ansong Ni
    ,
    Linyong Nan
    ,
    Jungo Kasai
    ,
    Tao Yu
    ,
    Rui Zhang
    ,
    Alexander R. Fabbri
    ,
    Wojciech Kryscinski
    ,
    Semih Yavuz
    ,
    Ye Liu
    ,
    Xi Victoria Lin
    ,
    Shafiq Joty
    ,
    Yingbo Zhou
    ,
    Caiming Xiong
    , Rex Ying,
    Arman Cohan
    ,
    Dragomir Radev
  28. From Similarity to Superiority: Channel Clustering for Time Series Forecasting
    NeurIPS 2024 ·
    Jialin Chen
    ,
    Jan Eric Lenssen
    ,
    Aosong Feng
    ,
    Weihua Hu
    ,
    Matthias Fey
    ,
    Leandros Tassiulas
    ,
    Jure Leskovec
    , Rex Ying
  29. Hypformer: Exploring Efficient Transformer Fully in Hyperbolic Space
    SIGKDD 2024 ·
    Menglin Yang
    ,
    Harshit Verma
    ,
    Delvin Ce Zhang
    ,
    Jiahong Liu
    ,
    Irwin King
    , Rex Ying
  30. Learning High-Order Relationships of Brain Regions
    ICML 2024 ·
    Weikang Qiu
    ,
    Huangrui Chu
    ,
    Selena Wang
    ,
    Haolan Zuo
    ,
    Xiaoxiao Li
    ,
    Yize Zhao
    , Rex Ying
  31. Long Sequence Modeling with Attention Tensorization: From Sequence to Tensor Learning
    EMNLP 2024 ·
    Aosong Feng
    , Rex Ying,
    Leandros Tassiulas
  32. Online Detection of Anomalies in Temporal Knowledge Graphs with Interpretability
    SIGMOD 2024 ·
    Jiasheng Zhang
    , Rex Ying,
    Jie Shao
  33. P-FOLIO: Evaluating and Improving Logical Reasoning with Abundant Human-Written Reasoning Chains
    EMNLP 2024 ·
    Simeng Han
    ,
    Aaron Yu
    ,
    Rui Shen
    ,
    Zhenting Qi
    ,
    Martin Riddell
    ,
    Wenfei Zhou
    ,
    Yujie Qiao
    ,
    Yilun Zhao
    ,
    Semih Yavuz
    ,
    Ye Liu
    ,
    Shafiq Joty
    ,
    Yingbo Zhou
    ,
    Caiming Xiong
    ,
    Dragomir Radev
    , Rex Ying,
    Arman Cohan
  34. Position: Relational Deep Learning - Graph Representation Learning on Relational Databases
    ICML 2024 ·
    Matthias Fey
    ,
    Weihua Hu
    ,
    Kexin Huang
    ,
    Jan Eric Lenssen
    ,
    Rishabh Ranjan
    ,
    Joshua Robinson
    , Rex Ying,
    Jiaxuan You
    ,
    Jure Leskovec
  35. Position: TrustLLM: Trustworthiness in Large Language Models
    ICML 2024 ·
    Yue Huang
    ,
    Lichao Sun
    ,
    Haoran Wang
    ,
    Siyuan Wu
    ,
    Qihui Zhang
    ,
    Yuan Li
    ,
    Chujie Gao
    ,
    Yixin Huang
    ,
    Wenhan Lyu
    ,
    Yixuan Zhang
    ,
    Xiner Li
    ,
    Hanchi Sun
    ,
    Zhengliang Liu
    ,
    Yixin Liu
    ,
    Yijue Wang
    ,
    Zhikun Zhang
    ,
    Bertie Vidgen
    ,
    Bhavya Kailkhura
    ,
    Caiming Xiong
    ,
    Chaowei Xiao
    ,
    Chunyuan Li
    ,
    Eric P. Xing
    ,
    Furong Huang
    ,
    Hao Liu
    ,
    Heng Ji
    ,
    Hongyi Wang
    ,
    Huan Zhang
    ,
    Huaxiu Yao
    ,
    Manolis Kellis
    ,
    Marinka Zitnik
    ,
    Meng Jiang
    ,
    Mohit Bansal
    ,
    James Zou
    ,
    Jian Pei
    ,
    Jian Liu
    ,
    Jianfeng Gao
    ,
    Jiawei Han
    ,
    Jieyu Zhao
    ,
    Jiliang Tang
    ,
    Jindong Wang
    ,
    Joaquin Vanschoren
    ,
    John C. Mitchell
    ,
    Kai Shu
    ,
    Kaidi Xu
    ,
    Kai-Wei Chang
    ,
    Lifang He
    ,
    Lifu Huang
    ,
    Michael Backes
    ,
    Neil Zhenqiang Gong
    ,
    Philip S. Yu
    ,
    Pin-Yu Chen
    ,
    Quanquan Gu
    ,
    Ran Xu
    , Rex Ying,
    Shuiwang Ji
    ,
    Suman Jana
    ,
    Tianlong Chen
    ,
    Tianming Liu
    ,
    Tianyi Zhou
    ,
    William Wang
    ,
    Xiang Li
    ,
    Xiangliang Zhang
    ,
    Xiao Wang
    ,
    Xing Xie
    ,
    Xun Chen
    ,
    Xuyu Wang
    ,
    Yan Liu
    ,
    Yanfang Ye
    ,
    Yinzhi Cao
    ,
    Yong Chen
    ,
    Yue Zhao
  36. Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer
    NeurIPS 2024 ·
    Tinglin Huang
    ,
    Zhenqiao Song
    , Rex Ying,
    Wengong Jin
  37. Text-Attributed Graph Representation Learning: Methods, Applications, and Challenges
    WWW 2024 ·
    Delvin Ce Zhang
    ,
    Menglin Yang
    , Rex Ying,
    Hady W. Lauw
  38. Thought Propagation: an Analogical Approach to Complex Reasoning with Large Language Models
    ICLR 2024 ·
    Junchi Yu
    ,
    Ran He
    , Zhitao Ying