PPaperPicks

Siyuan Li

Westlake University, School of Engineering, Hangzhou, China

33 papers at tracked venues · 30 at CORE A* · active 2024–2026

DBLP profile ↗ORCID 0000-0001-6806-2468 ↗Google Scholar ↗Homepage ↗

Venues

ICLR ×8NeurIPS ×5AAAI ×4CVPR ×4ICML ×4IJCAI ×2ACL ×1ACM MM ×1ECCV ×1ICCV ×1SIGKDD ×1WWW ×1

Frequent coauthors

Stan Z. Li
×22
Cheng Tan
×17
Zicheng Liu
×12
Yufei Huang
×11
Zhangyang Gao
×11
Haitao Lin
×8
Lirong Wu
×8
Zedong Wang
×8
Chang Yu
×4
Yunfan Liu
×4
Jingxuan Wei
×4
Bihui Yu
×4

Papers

  1. Compliance-to-Code: Enhancing Financial Compliance Checking via Code Generation
    SIGKDD 2026 · Siyuan Li,
    Jian Chen
    ,
    Rui Yao
    ,
    Xuming Hu
    ,
    Peilin Zhou
    ,
    Weihua Qiu
    ,
    Simin Zhang
    ,
    Chucheng Dong
    ,
    Zhiyao Li
    ,
    Qipeng Xie
    ,
    Zixuan Yuan
  2. MergeDNA: Context-Aware Genome Modeling with Dynamic Tokenization Through Token Merging
    AAAI 2026 · Siyuan Li,
    Kai Yu
    ,
    Anna Wang
    ,
    Zicheng Liu
    ,
    Chang Yu
    ,
    Jingbo Zhou
    ,
    Qirong Yang
    ,
    Yucheng Guo
    ,
    Xiaoming Zhang
    ,
    Stan Z. Li
  3. TrinityDNA: A Bio-Inspired Foundational Model for Efficient Long-Sequence DNA Modeling
    AAAI 2026 ·
    Qirong Yang
    ,
    Yucheng Guo
    ,
    Zicheng Liu
    ,
    Yujie Yang
    ,
    Qijin Yin
    , Siyuan Li,
    Shaomin Ji
    ,
    Linlin Chao
    ,
    Xiaoming Zhang
  4. VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
    WWW 2026 ·
    Jingbo Zhou
    ,
    Jun Xia
    , Siyuan Li,
    Yunfan Liu
    ,
    Wenjun Wang
    ,
    Yufei Huang
    ,
    Changxi Chi
    ,
    Mutian Hong
    ,
    Zhuoli Ouyang
    ,
    Shu Wang
    ,
    Zhongqi Wang
    ,
    Xingyu Wu
    ,
    Chang Yu
    ,
    Stan Z. Li
  5. AlphaFold Database Debiasing for Robust Inverse Folding
    NeurIPS 2025 ·
    Cheng Tan
    ,
    Zhenxiao Cao
    ,
    Zhangyang Gao
    , Siyuan Li,
    Yufei Huang
    ,
    Stan Z. Li
  6. DaCapo: Score Distillation as Stacked Bridge for Fast and High-quality 3D Editing
    CVPR 2025 ·
    Yufei Huang
    ,
    Bangyan Liao
    ,
    Yuqi Hu
    ,
    Haitao Lin
    ,
    Lirong Wu
    , Siyuan Li,
    Cheng Tan
    ,
    Zicheng Liu
    ,
    Yunfan Liu
    ,
    Zelin Zang
    ,
    Chang Yu
    ,
    Zhen Lei
  7. EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow
    ICLR 2025 ·
    Yufei Huang
    ,
    Yunshu Liu
    ,
    Lirong Wu
    ,
    Haitao Lin
    ,
    Cheng Tan
    ,
    Odin Zhang
    ,
    Zhangyang Gao
    , Siyuan Li,
    Zicheng Liu
    ,
    Yunfan Liu
    ,
    Tailin Wu
    ,
    Stan Z. Li
  8. From Words to Structured Visuals: A Benchmark and Framework for Text-to-Diagram Generation and Editing
    CVPR 2025 ·
    Jingxuan Wei
    ,
    Cheng Tan
    ,
    Qi Chen
    ,
    Gaowei Wu
    , Siyuan Li,
    Zhangyang Gao
    ,
    Linzhuang Sun
    ,
    Bihui Yu
    ,
    Ruifeng Guo
  9. MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
    ICLR 2025 ·
    Cheng Tan
    ,
    Zhenxiao Cao
    ,
    Zhangyang Gao
    ,
    Lirong Wu
    , Siyuan Li,
    Yufei Huang
    ,
    Jun Xia
    ,
    Bozhen Hu
    ,
    Stan Z. Li
  10. MergeVQ: A Unified Framework for Visual Generation and Representation with Disentangled Token Merging and Quantization
    CVPR 2025 · Siyuan Li,
    Luyuan Zhang
    ,
    Zedong Wang
    ,
    Juanxi Tian
    ,
    Cheng Tan
    ,
    Zicheng Liu
    ,
    Chang Yu
    ,
    Qingsong Xie
    ,
    Haonan Lu
    ,
    Haoqian Wang
    ,
    Zhen Lei
  11. Rep-MTL: Unleashing the Power of Representation-Level Task Saliency for Multi-Task Learning
    ICCV 2025 ·
    Zedong Wang
    , Siyuan Li,
    Dan Xu
  12. ResearchPulse: Building Method-Experiment Chains through Multi-Document Scientific Inference
    ACM MM 2025 ·
    Qi Chen
    ,
    Jingxuan Wei
    ,
    Zhuoya Yao
    ,
    Haiguang Wang
    ,
    Gaowei Wu
    ,
    Bihui Yu
    , Siyuan Li,
    Cheng Tan
  13. SketchAgent: Generating Structured Diagrams from Hand-Drawn Sketches
    IJCAI 2025 ·
    Cheng Tan
    ,
    Qi Chen
    ,
    Jingxuan Wei
    ,
    Gaowei Wu
    ,
    Zhangyang Gao
    , Siyuan Li,
    Bihui Yu
    ,
    Ruifeng Guo
    ,
    Stan Z. Li
  14. Taming LLMs with Gradient Grouping
    ACL 2025 · Siyuan Li,
    Juanxi Tian
    ,
    Zedong Wang
    ,
    Xin Jin
    ,
    Zicheng Liu
    ,
    Wentao Zhang
    ,
    Dan Xu
  15. Towards Homogeneous Lexical Tone Decoding from Heterogeneous Intracranial Recordings
    ICLR 2025 ·
    Di Wu
    , Siyuan Li,
    Chen Feng
    ,
    Lu Cao
    ,
    Yue Zhang
    ,
    Jie Yang
    ,
    Mohamad Sawan
  16. Boosting the Power of Small Multimodal Reasoning Models to Match Larger Models with Self-consistency Training
    ECCV 2024 ·
    Cheng Tan
    ,
    Jingxuan Wei
    ,
    Zhangyang Gao
    ,
    Linzhuang Sun
    , Siyuan Li,
    Ruifeng Guo
    ,
    Bihui Yu
    ,
    Stan Z. Li
  17. FaceChain-ImagineID: Freely Crafting High-Fidelity Diverse Talking Faces from Disentangled Audio
    CVPR 2024 ·
    Chao Xu
    ,
    Yang Liu
    ,
    Jiazheng Xing
    ,
    Weida Wang
    ,
    Mingze Sun
    ,
    Jun Dan
    ,
    Tianxin Huang
    , Siyuan Li,
    Zhi-Qi Cheng
    ,
    Ying Tai
    ,
    Baigui Sun
  18. Instructor-inspired Machine Learning for Robust Molecular Property Prediction
    NeurIPS 2024 ·
    Fang Wu
    ,
    Shuting Jin
    , Siyuan Li,
    Stan Z. Li
  19. KW-Design: Pushing the Limit of Protein Design via Knowledge Refinement
    ICLR 2024 ·
    Zhangyang Gao
    ,
    Cheng Tan
    ,
    Xingran Chen
    ,
    Yijie Zhang
    ,
    Jun Xia
    , Siyuan Li,
    Stan Z. Li
  20. Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning
    ICML 2024 ·
    Lirong Wu
    ,
    Yijun Tian
    ,
    Haitao Lin
    ,
    Yufei Huang
    , Siyuan Li,
    Nitesh V. Chawla
    ,
    Stan Z. Li
  21. LongVQ: Long Sequence Modeling with Vector Quantization on Structured Memory
    IJCAI 2024 ·
    Zicheng Liu
    ,
    Li Wang
    , Siyuan Li,
    Zedong Wang
    ,
    Haitao Lin
    ,
    Stan Z. Li
  22. MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding
    ICLR 2024 ·
    Lirong Wu
    ,
    Yijun Tian
    ,
    Yufei Huang
    , Siyuan Li,
    Haitao Lin
    ,
    Nitesh V. Chawla
    ,
    Stan Z. Li
  23. MogaNet: Multi-order Gated Aggregation Network
    ICLR 2024 · Siyuan Li,
    Zedong Wang
    ,
    Zicheng Liu
    ,
    Cheng Tan
    ,
    Haitao Lin
    ,
    Di Wu
    ,
    Zhiyuan Chen
    ,
    Jiangbin Zheng
    ,
    Stan Z. Li
  24. PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation
    NeurIPS 2024 ·
    Chenrui Duan
    ,
    Zelin Zang
    , Siyuan Li,
    Yongjie Xu
    ,
    Stan Z. Li
  25. Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction
    AAAI 2024 ·
    Yufei Huang
    , Siyuan Li,
    Lirong Wu
    ,
    Jin Su
    ,
    Haitao Lin
    ,
    Odin Zhang
    ,
    Zihan Liu
    ,
    Zhangyang Gao
    ,
    Jiangbin Zheng
    ,
    Stan Z. Li
  26. RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design
    ICLR 2024 ·
    Cheng Tan
    ,
    Yijie Zhang
    ,
    Zhangyang Gao
    ,
    Bozhen Hu
    , Siyuan Li,
    Zicheng Liu
    ,
    Stan Z. Li
  27. Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
    ICML 2024 ·
    Yufei Huang
    ,
    Odin Zhang
    ,
    Lirong Wu
    ,
    Cheng Tan
    ,
    Haitao Lin
    ,
    Zhangyang Gao
    , Siyuan Li,
    Stan Z. Li
  28. SemiReward: A General Reward Model for Semi-supervised Learning
    ICLR 2024 · Siyuan Li,
    Weiyang Jin
    ,
    Zedong Wang
    ,
    Fang Wu
    ,
    Zicheng Liu
    ,
    Cheng Tan
    ,
    Stan Z. Li
  29. Short-Long Convolutions Help Hardware-Efficient Linear Attention to Focus on Long Sequences
    ICML 2024 ·
    Zicheng Liu
    , Siyuan Li,
    Li Wang
    ,
    Zedong Wang
    ,
    Yunfan Liu
    ,
    Stan Z. Li
  30. TopoFR: A Closer Look at Topology Alignment on Face Recognition
    NeurIPS 2024 ·
    Jun Dan
    ,
    Yang Liu
    ,
    Jiankang Deng
    ,
    Haoyu Xie
    , Siyuan Li,
    Baigui Sun
    ,
    Shan Luo
  31. UniIF: Unified Molecule Inverse Folding
    NeurIPS 2024 ·
    Zhangyang Gao
    ,
    Jue Wang
    ,
    Cheng Tan
    ,
    Lirong Wu
    ,
    Yufei Huang
    , Siyuan Li,
    Zhirui Ye
    ,
    Stan Z. Li
  32. VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
    ICML 2024 · Siyuan Li,
    Zedong Wang
    ,
    Zicheng Liu
    ,
    Di Wu
    ,
    Cheng Tan
    ,
    Jiangbin Zheng
    ,
    Yufei Huang
    ,
    Stan Z. Li
  33. Wavelet-Driven Spatiotemporal Predictive Learning: Bridging Frequency and Time Variations
    AAAI 2024 ·
    Xuesong Nie
    ,
    Yunfeng Yan
    , Siyuan Li,
    Cheng Tan
    ,
    Xi Chen
    ,
    Haoyuan Jin
    ,
    Zhihang Zhu
    ,
    Stan Z. Li
    ,
    Donglian Qi