PPaperPicks

Yuan Qi

Fudan University, AI3 Institute, Shanghai, China

22 papers at tracked venues · 19 at CORE A* · active 2024–2026

DBLP profile ↗ORCID 0009-0002-9377-5755 ↗Homepage ↗

Venues

ICCV ×4AAAI ×3ACL ×3ICLR ×2ICML ×2MICCAI ×2SIGKDD ×2EMNLP ×1NeurIPS ×1SIGIR ×1WWW ×1

Frequent coauthors

Yuan Cheng
×12
Yinghui Xu
×8
Wei Chu
×7
Chao Qu
×6
Xiaoyu Tan
×6
Xihe Qiu
×6
Weidi Xu
×4
Yichi Zhang
×4
Xin Guo
×4
Chen Jiang
×4
Fenglei Cao
×3
Yuchen Liu
×3

Papers

  1. ChemAmp: Amplified Chemistry Tools via Composable Agents
    ACL 2026 ·
    Zhucong Li
    ,
    Powei Chang
    ,
    Jin Xiao
    ,
    Zhijian Zhou
    ,
    Qianyu He
    ,
    Jiaqing Liang
    ,
    Fenglei Cao
    ,
    Yinghui Xu
    , Yuan Qi
  2. Constraints-Guided Diffusion Reasoner for Neuro-Symbolic Learning
    AAAI 2026 ·
    Xuan Zhang
    ,
    Zhijian Zhou
    ,
    Weidi Xu
    ,
    Yanting Miao
    ,
    Chao Qu
    , Yuan Qi
  3. PET2Rep: Towards Vision-Language Model-Drived Automated Radiology Report Generation for Positron Emission Tomography
    AAAI 2026 ·
    Yichi Zhang
    ,
    Wenbo Zhang
    ,
    Zehui Ling
    ,
    Gang Feng
    ,
    Sisi Peng
    ,
    Deshu Chen
    ,
    Yuchen Liu
    ,
    Hongwei Zhang
    ,
    Shuqi Wang
    ,
    Lanlan Li
    ,
    Limei Han
    ,
    Yuan Cheng
    ,
    Zixin Hu
    , Yuan Qi,
    Le Xue
  4. 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance
    AAAI 2025 ·
    Kaihui Cheng
    ,
    Ce Liu
    ,
    Qingkun Su
    ,
    Jun Wang
    ,
    Liwei Zhang
    ,
    Yining Tang
    ,
    Yao Yao
    ,
    Siyu Zhu
    , Yuan Qi
  5. CENTAUR: Bridging the Impossible Trinity of Privacy, Efficiency, and Performance in Privacy-Preserving Transformer Inference
    ACL 2025 ·
    Jinglong Luo
    ,
    Guanzhong Chen
    ,
    Yehong Zhang
    ,
    Shiyu Liu
    ,
    Hui Wang
    ,
    Yue Yu
    ,
    Xun Zhou
    , Yuan Qi,
    Zenglin Xu
  6. ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibiltiy Data
    NeurIPS 2025 ·
    Yifeng Jiao
    ,
    Yuchen Liu
    ,
    Yu Zhang
    ,
    Xin Guo
    ,
    Yushuai Wu
    ,
    Chen Jiang
    ,
    Jiyang Li
    ,
    Hongwei Zhang
    ,
    Limei Han
    ,
    Xin Gao
    , Yuan Qi,
    Yuan Cheng
  7. Efficient Network Automatic Relevance Determination
    ICML 2025 ·
    Hongwei Zhang
    ,
    Ziqi Ye
    ,
    Xinyuan Wang
    ,
    Xin Guo
    ,
    Zenglin Xu
    ,
    Yuan Cheng
    ,
    Zixin Hu
    , Yuan Qi
  8. Enhancing the Reliability of Auto-Prompting SAM for Medical Image Segmentation with Uncertainty Estimation and Rectification
    ICCV 2025 ·
    Yichi Zhang
    ,
    Shiyao Hu
    ,
    Le Xue
    ,
    Sijie Ren
    ,
    Zixin Hu
    ,
    Yuan Cheng
    , Yuan Qi
  9. Equivariant Masked Position Prediction for Efficient Molecular Representation
    ICLR 2025 ·
    Junyi An
    ,
    Chao Qu
    ,
    Yunfei Shi
    ,
    Xinhao Liu
    ,
    Qianwei Tang
    ,
    Fenglei Cao
    , Yuan Qi
  10. Meta-Agent-Workflow: Streamlining Tool Usage in LLMs through Workflow Construction, Retrieval, and Refinement
    WWW 2025 ·
    Xiaoyu Tan
    ,
    Bin Li
    ,
    Xihe Qiu
    ,
    Chao Qu
    ,
    Wei Chu
    ,
    Yinghui Xu
    , Yuan Qi
  11. OpenCoder: The Open Cookbook for Top-Tier Code Large Language Models
    ACL 2025 ·
    Siming Huang
    ,
    Tianhao Cheng
    ,
    Jason Klein Liu
    ,
    Weidi Xu
    ,
    Jiaran Hao
    ,
    Liuyihan Song
    ,
    Yang Xu
    ,
    Jian Yang
    ,
    Jiaheng Liu
    ,
    Chenchen Zhang
    ,
    Linzheng Chai
    ,
    Ruifeng Yuan
    ,
    Xianzhen Luo
    ,
    Qiufeng Wang
    ,
    YuanTao Fan
    ,
    Qingfu Zhu
    ,
    Zhaoxiang Zhang
    ,
    Yang Gao
    ,
    Jie Fu
    ,
    Qian Liu
    ,
    Houyi Li
    ,
    Ge Zhang
    , Yuan Qi,
    Yinghui Xu
    ,
    Wei Chu
    ,
    Zili Wang
  12. Prolog-Driven Rule-Based Diagnostics with Large Language Models for Precise Clinical Decision Support
    MICCAI 2025 ·
    Xiaoyu Tan
    ,
    Bin Li
    ,
    Weidi Xu
    ,
    Chao Qu
    ,
    Wei Chu
    ,
    Yinghui Xu
    , Yuan Qi,
    Xihe Qiu
  13. SegAnyPET: Universal Promptable Segmentation from Positron Emission Tomography Images
    ICCV 2025 ·
    Yichi Zhang
    ,
    Le Xue
    ,
    Wenbo Zhang
    ,
    Lanlan Li
    ,
    Yuchen Liu
    ,
    Chen Jiang
    ,
    Yuan Cheng
    , Yuan Qi
  14. Struct-X: Enhancing the Reasoning Capabilities of Large Language Models in Structured Data Scenarios
    SIGKDD 2025 ·
    Xiaoyu Tan
    ,
    Haoyu Wang
    ,
    Xihe Qiu
    ,
    Leijun Cheng
    ,
    Yuan Cheng
    ,
    Wei Chu
    ,
    Yinghui Xu
    , Yuan Qi
  15. Structure-Aware Semantic Discrepancy and Consistency for 3D Medical Image Self-Supervised Learning
    ICCV 2025 ·
    Tan Pan
    ,
    Zhaorui Tan
    ,
    Kaiyu Guo
    ,
    Dongli Xu
    ,
    Weidi Xu
    ,
    Chen Jiang
    ,
    Xin Guo
    , Yuan Qi,
    Yuan Cheng
  16. Towards a Universal 3D Medical Multi-Modality Generalization via Learning Personalized Invariant Representation
    ICCV 2025 ·
    Zhaorui Tan
    ,
    Xi Yang
    ,
    Tan Pan
    ,
    Tianyi Liu
    ,
    Chen Jiang
    ,
    Xin Guo
    ,
    Qiufeng Wang
    ,
    Anh Nguyen
    , Yuan Qi,
    Kaizhu Huang
    ,
    Yuan Cheng
  17. Enhancing Personalized Headline Generation via Offline Goal-conditioned Reinforcement Learning with Large Language Models
    SIGKDD 2024 ·
    Xiaoyu Tan
    ,
    Leijun Cheng
    ,
    Xihe Qiu
    ,
    Shaojie Shi
    ,
    Yuan Cheng
    ,
    Wei Chu
    ,
    Yinghui Xu
    , Yuan Qi
  18. Enhancing Task Performance in Continual Instruction Fine-tuning Through Format Uniformity
    SIGIR 2024 ·
    Xiaoyu Tan
    ,
    Leijun Cheng
    ,
    Xihe Qiu
    ,
    Shaojie Shi
    ,
    Yuan Cheng
    ,
    Wei Chu
    ,
    Yinghui Xu
    , Yuan Qi
  19. Exploring CNN and Transformer Architectures for Multi-class Bi-Atrial Segmentation from Late Gadolinium-Enhanced MRI
    MICCAI 2024 ·
    Yichi Zhang
    ,
    Yuan Cheng
    , Yuan Qi
  20. Hybrid Directional Graph Neural Network for Molecules
    ICLR 2024 ·
    Junyi An
    ,
    Chao Qu
    ,
    Zhipeng Zhou
    ,
    Fenglei Cao
    ,
    Yinghui Xu
    , Yuan Qi,
    Furao Shen
  21. Sign is Not a Remedy: Multiset-to-Multiset Message Passing for Learning on Heterophilic Graphs
    ICML 2024 ·
    Langzhang Liang
    ,
    Sunwoo Kim
    ,
    Kijung Shin
    ,
    Zenglin Xu
    ,
    Shirui Pan
    , Yuan Qi
  22. ULMR: Unlearning Large Language Models via Negative Response and Model Parameter Average
    EMNLP 2024 ·
    Shaojie Shi
    ,
    Xiaoyu Tan
    ,
    Xihe Qiu
    ,
    Chao Qu
    ,
    Kexin Nie
    ,
    Yuan Cheng
    ,
    Wei Chu
    ,
    Yinghui Xu
    , Yuan Qi