Yufei Huang

Zhejiang University, Hangzhou, China

23 papers at tracked venues · 22 at CORE A* · active 2024–2026

DBLP profile ↗ORCID 0009-0007-8184-4529 ↗Google Scholar ↗Homepage ↗

Venues

AAAI ×6 ICLR ×6 ICML ×5 NeurIPS ×3 CIKM ×1 CVPR ×1 WWW ×1

Frequent coauthors

Stan Z. Li

×22

Lirong Wu

×19

Haitao Lin

×15

Cheng Tan

×14

Siyuan Li

×11

Zhangyang Gao

×11

Yunfan Liu

×8

Odin Zhang

×6

Zicheng Liu

×6

Jun Xia

×4

Jiangbin Zheng

×4

Bozhen Hu

×3

Papers

Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges
AAAI 2026 ·
Changxi Chi
, Yufei Huang,
Jun Xia
,
Jiangbin Zheng
,
Yunfan Liu
,
Zelin Zang
,
Stan Z. Li
VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
WWW 2026 ·
Jingbo Zhou
,
Jun Xia
,
Siyuan Li
,
Yunfan Liu
,
Wenjun Wang
, Yufei Huang,
Changxi Chi
,
Mutian Hong
,
Zhuoli Ouyang
,
Shu Wang
,
Zhongqi Wang
,
Xingyu Wu
,
Chang Yu
,
Stan Z. Li
A Simple yet Effective ΔΔG Predictor is An Unsupervised Antibody Optimizer and Explainer
ICLR 2025 ·
Lirong Wu
,
Yunfan Liu
,
Haitao Lin
, Yufei Huang,
Guojiang Zhao
,
Zhifeng Gao
,
Stan Z. Li
AlphaFold Database Debiasing for Robust Inverse Folding
NeurIPS 2025 ·
Cheng Tan
,
Zhenxiao Cao
,
Zhangyang Gao
,
Siyuan Li
, Yufei Huang,
Stan Z. Li
CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph
ICLR 2025 ·
Haitao Lin
,
Guojiang Zhao
,
Odin Zhang
, Yufei Huang,
Lirong Wu
,
Cheng Tan
,
Zicheng Liu
,
Zhifeng Gao
,
Stan Z. Li
DaCapo: Score Distillation as Stacked Bridge for Fast and High-quality 3D Editing
CVPR 2025 · Yufei Huang,
Bangyan Liao
,
Yuqi Hu
,
Haitao Lin
,
Lirong Wu
,
Siyuan Li
,
Cheng Tan
,
Zicheng Liu
,
Yunfan Liu
,
Zelin Zang
,
Chang Yu
,
Zhen Lei
EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow
ICLR 2025 · Yufei Huang,
Yunshu Liu
,
Lirong Wu
,
Haitao Lin
,
Cheng Tan
,
Odin Zhang
,
Zhangyang Gao
,
Siyuan Li
,
Zicheng Liu
,
Yunfan Liu
,
Tailin Wu
,
Stan Z. Li
FoldToken: Learning Protein Language via Vector Quantization and Beyond
AAAI 2025 ·
Zhangyang Gao
,
Cheng Tan
,
Jue Wang
, Yufei Huang,
Lirong Wu
,
Stan Z. Li
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
ICLR 2025 ·
Cheng Tan
,
Zhenxiao Cao
,
Zhangyang Gao
,
Lirong Wu
,
Siyuan Li
, Yufei Huang,
Jun Xia
,
Bozhen Hu
,
Stan Z. Li
Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization
AAAI 2025 ·
Lirong Wu
,
Haitao Lin
, Yufei Huang,
Zhangyang Gao
,
Cheng Tan
,
Yunfan Liu
,
Tailin Wu
,
Stan Z. Li
dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen
AAAI 2025 ·
Cheng Tan
,
Yijie Zhang
,
Zhangyang Gao
, Yufei Huang,
Haitao Lin
,
Lirong Wu
,
Fandi Wu
,
Mathieu Blanchette
,
Stan Z. Li
Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks
ICLR 2024 ·
Tianyu Fan
,
Lirong Wu
, Yufei Huang,
Haitao Lin
,
Cheng Tan
,
Zhangyang Gao
,
Stan Z. Li
GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation
ICML 2024 ·
Haitao Lin
,
Lirong Wu
, Yufei Huang,
Yunfan Liu
,
Odin Zhang
,
Yuanqing Zhou
,
Rui Sun
,
Stan Z. Li
Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure
NeurIPS 2024 ·
Bozhen Hu
,
Cheng Tan
,
Jun Xia
,
Yue Liu
,
Lirong Wu
,
Jiangbin Zheng
,
Yongjie Xu
, Yufei Huang,
Stan Z. Li
Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning
ICML 2024 ·
Lirong Wu
,
Yijun Tian
,
Haitao Lin
, Yufei Huang,
Siyuan Li
,
Nitesh V. Chawla
,
Stan Z. Li
MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding
ICLR 2024 ·
Lirong Wu
,
Yijun Tian
, Yufei Huang,
Siyuan Li
,
Haitao Lin
,
Nitesh V. Chawla
,
Stan Z. Li
PPFLOW: Target-Aware Peptide Design with Torsional Flow Matching
ICML 2024 ·
Haitao Lin
,
Odin Zhang
,
Huifeng Zhao
,
Dejun Jiang
,
Lirong Wu
,
Zicheng Liu
, Yufei Huang,
Stan Z. Li
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
AAAI 2024 ·
Lirong Wu
, Yufei Huang,
Cheng Tan
,
Zhangyang Gao
,
Bozhen Hu
,
Haitao Lin
,
Zicheng Liu
,
Stan Z. Li
Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction
AAAI 2024 · Yufei Huang,
Siyuan Li
,
Lirong Wu
,
Jin Su
,
Haitao Lin
,
Odin Zhang
,
Zihan Liu
,
Zhangyang Gao
,
Jiangbin Zheng
,
Stan Z. Li
Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
ICML 2024 · Yufei Huang,
Odin Zhang
,
Lirong Wu
,
Cheng Tan
,
Haitao Lin
,
Zhangyang Gao
,
Siyuan Li
,
Stan Z. Li
Teach Harder, Learn Poorer: Rethinking Hard Sample Distillation for GNN-to-MLP Knowledge Distillation
CIKM 2024 ·
Lirong Wu
,
Yunfan Liu
,
Haitao Lin
, Yufei Huang,
Stan Z. Li
UniIF: Unified Molecule Inverse Folding
NeurIPS 2024 ·
Zhangyang Gao
,
Jue Wang
,
Cheng Tan
,
Lirong Wu
, Yufei Huang,
Siyuan Li
,
Zhirui Ye
,
Stan Z. Li
VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
ICML 2024 ·
Siyuan Li
,
Zedong Wang
,
Zicheng Liu
,
Di Wu
,
Cheng Tan
,
Jiangbin Zheng
, Yufei Huang,
Stan Z. Li