Yufei Huang

Venues

Frequent coauthors

Papers

1. Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges
   AAAI 2026 ·

   Changxi Chi

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2. VecFormer: Towards Efficient and Generalizable Graph Transformer with Graph Token Attention
   WWW 2026 ·

   Jingbo Zhou

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3. A Simple yet Effective ΔΔG Predictor is An Unsupervised Antibody Optimizer and Explainer
   ICLR 2025 ·

   Lirong Wu

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4. AlphaFold Database Debiasing for Robust Inverse Folding
   NeurIPS 2025 ·

   Cheng Tan

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5. CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph
   ICLR 2025 ·

   Haitao Lin

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6. DaCapo: Score Distillation as Stacked Bridge for Fast and High-quality 3D Editing
   CVPR 2025 · Yufei Huang
7. EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow
   ICLR 2025 · Yufei Huang
8. FoldToken: Learning Protein Language via Vector Quantization and Beyond
   AAAI 2025 ·

   Zhangyang Gao

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9. MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
   ICLR 2025 ·

   Cheng Tan

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10. Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization
    AAAI 2025 ·

    Lirong Wu

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11. dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen
    AAAI 2025 ·

    Cheng Tan

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12. Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks
    ICLR 2024 ·

    Tianyu Fan

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13. GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation
    ICML 2024 ·

    Haitao Lin

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14. Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure
    NeurIPS 2024 ·

    Bozhen Hu

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15. Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning
    ICML 2024 ·

    Lirong Wu

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16. MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding
    ICLR 2024 ·

    Lirong Wu

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17. PPFLOW: Target-Aware Peptide Design with Torsional Flow Matching
    ICML 2024 ·

    Haitao Lin

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18. PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
    AAAI 2024 ·

    Lirong Wu

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19. Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction
    AAAI 2024 · Yufei Huang
20. Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
    ICML 2024 · Yufei Huang
21. Teach Harder, Learn Poorer: Rethinking Hard Sample Distillation for GNN-to-MLP Knowledge Distillation
    CIKM 2024 ·

    Lirong Wu

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22. UniIF: Unified Molecule Inverse Folding
    NeurIPS 2024 ·

    Zhangyang Gao

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23. VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
    ICML 2024 ·

    Siyuan Li

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