Zhangyang Gao

29 papers at tracked venues · 26 at CORE A* · active 2024–2025

DBLP profile ↗ORCID search ↗

Venues

AAAI ×6 ICLR ×6 NeurIPS ×6 CVPR ×3 ICML ×3 ECCV ×1 ECML-PKDD ×1 ICCV ×1 ICDE ×1 IJCAI ×1

Frequent coauthors

Stan Z. Li

×27

Cheng Tan

×26

Lirong Wu

×13

Siyuan Li

×11

Yufei Huang

×11

Jun Xia

×10

Bozhen Hu

×9

Haitao Lin

×7

Jiangbin Zheng

×5

Jingxuan Wei

×4

Bihui Yu

×4

Ruifeng Guo

×4

Papers

AlphaFold Database Debiasing for Robust Inverse Folding
NeurIPS 2025 ·
Cheng Tan
,
Zhenxiao Cao
, Zhangyang Gao,
Siyuan Li
,
Yufei Huang
,
Stan Z. Li
EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow
ICLR 2025 ·
Yufei Huang
,
Yunshu Liu
,
Lirong Wu
,
Haitao Lin
,
Cheng Tan
,
Odin Zhang
, Zhangyang Gao,
Siyuan Li
,
Zicheng Liu
,
Yunfan Liu
,
Tailin Wu
,
Stan Z. Li
FoldToken: Learning Protein Language via Vector Quantization and Beyond
AAAI 2025 · Zhangyang Gao,
Cheng Tan
,
Jue Wang
,
Yufei Huang
,
Lirong Wu
,
Stan Z. Li
From Words to Structured Visuals: A Benchmark and Framework for Text-to-Diagram Generation and Editing
CVPR 2025 ·
Jingxuan Wei
,
Cheng Tan
,
Qi Chen
,
Gaowei Wu
,
Siyuan Li
, Zhangyang Gao,
Linzhuang Sun
,
Bihui Yu
,
Ruifeng Guo
G2PDiffusion: Cross-Species Genotype-to-Phenotype Prediction Via Evolutionary Diffusion
ICCV 2025 ·
Mengdi Liu
, Zhangyang Gao,
Hong Chang
,
Stan Z. Li
,
Shiguang Shan
,
Xilin Chen
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
ICLR 2025 ·
Cheng Tan
,
Zhenxiao Cao
, Zhangyang Gao,
Lirong Wu
,
Siyuan Li
,
Yufei Huang
,
Jun Xia
,
Bozhen Hu
,
Stan Z. Li
ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search
NeurIPS 2025 ·
Mengdi Liu
,
Xiaoxue Cheng
, Zhangyang Gao,
Hong Chang
,
Cheng Tan
,
Shiguang Shan
,
Xilin Chen
ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing
ICLR 2025 ·
Shaorong Chen
,
Jun Xia
,
Jingbo Zhou
,
Lecheng Zhang
, Zhangyang Gao,
Bozhen Hu
,
Cheng Tan
,
Wenjie Du
,
Stan Z. Li
Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization
AAAI 2025 ·
Lirong Wu
,
Haitao Lin
,
Yufei Huang
, Zhangyang Gao,
Cheng Tan
,
Yunfan Liu
,
Tailin Wu
,
Stan Z. Li
SketchAgent: Generating Structured Diagrams from Hand-Drawn Sketches
IJCAI 2025 ·
Cheng Tan
,
Qi Chen
,
Jingxuan Wei
,
Gaowei Wu
, Zhangyang Gao,
Siyuan Li
,
Bihui Yu
,
Ruifeng Guo
,
Stan Z. Li
dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen
AAAI 2025 ·
Cheng Tan
,
Yijie Zhang
, Zhangyang Gao,
Yufei Huang
,
Haitao Lin
,
Lirong Wu
,
Fandi Wu
,
Mathieu Blanchette
,
Stan Z. Li
A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer
ICML 2024 · Zhangyang Gao,
Daize Dong
,
Cheng Tan
,
Jun Xia
,
Bozhen Hu
,
Stan Z. Li
AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics against Data Biases
NeurIPS 2024 ·
Jun Xia
,
Shaorong Chen
,
Jingbo Zhou
,
Xiaojun Shan
,
Wenjie Du
, Zhangyang Gao,
Cheng Tan
,
Bozhen Hu
,
Jiangbin Zheng
,
Stan Z. Li
Boosting the Power of Small Multimodal Reasoning Models to Match Larger Models with Self-consistency Training
ECCV 2024 ·
Cheng Tan
,
Jingxuan Wei
, Zhangyang Gao,
Linzhuang Sun
,
Siyuan Li
,
Ruifeng Guo
,
Bihui Yu
,
Stan Z. Li
Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer
AAAI 2024 ·
Cheng Tan
, Zhangyang Gao,
Lirong Wu
,
Jun Xia
,
Jiangbin Zheng
,
Xihong Yang
,
Yue Liu
,
Bozhen Hu
,
Stan Z. Li
Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective
ICML 2024 ·
Cheng Tan
, Zhangyang Gao,
Hanqun Cao
,
Xingran Chen
,
Ge Wang
,
Lirong Wu
,
Jun Xia
,
Jiangbin Zheng
,
Stan Z. Li
Decoupling Weighing and Selecting for Integrating Multiple Graph Pre-training Tasks
ICLR 2024 ·
Tianyu Fan
,
Lirong Wu
,
Yufei Huang
,
Haitao Lin
,
Cheng Tan
, Zhangyang Gao,
Stan Z. Li
DiscoGNN: A Sample-Efficient Framework for Self-Supervised Graph Representation Learning
ICDE 2024 ·
Jun Xia
,
Shaorong Chen
,
Yue Liu
, Zhangyang Gao,
Jiangbin Zheng
,
Xihong Yang
,
Stan Z. Li
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning
NeurIPS 2024 ·
Sizhe Liu
,
Jun Xia
,
Lecheng Zhang
,
Yuchen Liu
,
Yue Liu
,
Wenjie Du
, Zhangyang Gao,
Bozhen Hu
,
Cheng Tan
,
Hongxin Xiang
,
Stan Z. Li
General Point Model Pretraining with Autoencoding and Autoregressive
CVPR 2024 ·
Zhe Li
, Zhangyang Gao,
Cheng Tan
,
Bocheng Ren
,
Laurence T. Yang
,
Stan Z. Li
Interpretable and Generalizable Spatiotemporal Predictive Learning with Disentangled Consistency
ECML-PKDD 2024 ·
Jingxuan Wei
,
Cheng Tan
, Zhangyang Gao,
Linzhuang Sun
,
Bihui Yu
,
Ruifeng Guo
,
Stan Z. Li
KW-Design: Pushing the Limit of Protein Design via Knowledge Refinement
ICLR 2024 · Zhangyang Gao,
Cheng Tan
,
Xingran Chen
,
Yijie Zhang
,
Jun Xia
,
Siyuan Li
,
Stan Z. Li
MLIP: Enhancing Medical Visual Representation with Divergence Encoder and Knowledge-guided Contrastive Learning
CVPR 2024 ·
Zhe Li
,
Laurence T. Yang
,
Bocheng Ren
,
Xin Nie
, Zhangyang Gao,
Cheng Tan
,
Stan Z. Li
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
AAAI 2024 ·
Lirong Wu
,
Yufei Huang
,
Cheng Tan
, Zhangyang Gao,
Bozhen Hu
,
Haitao Lin
,
Zicheng Liu
,
Stan Z. Li
ProtGO: Function-Guided Protein Modeling for Unified Representation Learning
NeurIPS 2024 ·
Bozhen Hu
,
Cheng Tan
,
Yongjie Xu
, Zhangyang Gao,
Jun Xia
,
Lirong Wu
,
Stan Z. Li
Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction
AAAI 2024 ·
Yufei Huang
,
Siyuan Li
,
Lirong Wu
,
Jin Su
,
Haitao Lin
,
Odin Zhang
,
Zihan Liu
, Zhangyang Gao,
Jiangbin Zheng
,
Stan Z. Li
RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design
ICLR 2024 ·
Cheng Tan
,
Yijie Zhang
, Zhangyang Gao,
Bozhen Hu
,
Siyuan Li
,
Zicheng Liu
,
Stan Z. Li
Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
ICML 2024 ·
Yufei Huang
,
Odin Zhang
,
Lirong Wu
,
Cheng Tan
,
Haitao Lin
, Zhangyang Gao,
Siyuan Li
,
Stan Z. Li
UniIF: Unified Molecule Inverse Folding
NeurIPS 2024 · Zhangyang Gao,
Jue Wang
,
Cheng Tan
,
Lirong Wu
,
Yufei Huang
,
Siyuan Li
,
Zhirui Ye
,
Stan Z. Li